Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRP | rs9432382 | chr1:95287687 | A/G | 0.000348 | 214 | 16.43 | 16.93 | 14.53 | KM Plot |
| KIRP | rs9432579 | chr1:95274408 | T/C | 1.16E-6 | 206 | 11.32 | 14.87 | 16.53 | KM Plot |
| KIRP | rs9432581 | chr1:95275133 | C/T | 1.06E-6 | 207 | 11.32 | 14.87 | 16.5 | KM Plot |
| KIRP | rs9559705 | chr13:110657790 | G/A | 6.46E-10 | 209 | 16.43 | 17.6 | 10.23 | KM Plot |
| KIRP | rs9559706 | chr13:110660381 | G/A | 7.53E-10 | 208 | 15.88 | 18 | 10.23 | KM Plot |
| KIRP | rs9581079 | chr13:25070871 | C/T | 9.56E-6 | 214 | 14.1 | 20.45 | 10.83 | KM Plot |
| KIRP | rs959460 | chr1:89849742 | A/T | 1.01E-5 | 214 | 16.53 | 14.52 | 4.07 | KM Plot |
| KIRP | rs9617600 | chr22:18086160 | T/A | 4.24E-5 | 214 | 16.43 | 20.27 | 10.55 | KM Plot |
| KIRP | rs9617601 | chr22:18092730 | A/T | 4.24E-5 | 214 | 16.43 | 20.27 | 10.55 | KM Plot |
| KIRP | rs962420 | chr8:30090935 | C/G | 7.99E-5 | 214 | 14.8 | 20.72 | 4.67 | KM Plot |
| KIRP | rs966762 | chr5:79936799 | A/T | 0.000105 | 214 | 18.65 | 14.83 | 9.77 | KM Plot |
| KIRP | rs967751 | chr11:34858084 | A/C | 0.00039 | 214 | 6.7 | 16.72 | 16.43 | KM Plot |
| KIRP | rs968183 | chr1:48818458 | T/C | 6.71E-7 | 209 | 14.83 | 19.53 | 11.03 | KM Plot |
| KIRP | rs9706402 | chr12:8393996 | G/A | 0.000294 | 210 | 14.97 | 19.87 | 6.07 | KM Plot |
| KIRP | rs9733353 | chr10:102027918 | C/T | 6.35E-6 | 213 | 16.43 | 22.77 | 3.6 | KM Plot |